Skip to content
Year-end checklist
Bookkeeping, payroll & tax for owners
Sole props & S corps

Bookkeeping for S corporations

S corporation books have to answer questions a sole proprietor's books never face: how much the owner was paid as wages, how much was taken as distributions, and whether any money moving between owner and company was really a loan. Monthly bookkeeping that keeps those apart is what makes Form 1120-S straightforward to prepare.

Why S corporation books are different

In a sole proprietorship, money the owner takes out is simply a draw, and it does not change the tax. In an S corporation the same transfer can be wages, a distribution, a loan or a reimbursement, and each is treated differently on the return. Wages carry payroll tax and appear on a W-2. Distributions reduce the owner's stock basis. Loans need to be repaid or documented. Reimbursements need an accountable plan behind them.

If the books record all of these as one account called draws, someone has to reconstruct the year before the return can be prepared. Keeping them separate month by month avoids that.

The owner-pay entries

These are the entries we pay the most attention to in S corporation books:

  • Officer wages recorded from the payroll reports, gross pay and taxes split out, so the books agree with the W-2
  • Distributions recorded to their own account, by shareholder, with dates
  • Shareholder loans in either direction kept in a separate balance sheet account
  • Reimbursements under an accountable plan recorded as business expenses, not as distributions
  • Health insurance premiums for a more-than-2% shareholder coded so they can be reported in W-2 Box 1

Wages come before distributions. If distributions are flowing and payroll has not started, that is worth raising early rather than at year end.

What monthly bookkeeping includes

Our bookkeeping service is monthly categorization and reconciliation, a month-end close so each period is actually finished, and financial statements you can read. The books are maintained so the tax return is built from them directly, rather than rebuilt from them.

It does not include audit or attestation work, and it does not include payroll processing. Payroll is covered separately as payroll support, and who does which payroll task is agreed in writing.

  1. 1.Transactions categorized and bank and card accounts reconciled to statements
  2. 2.Payroll reports matched to the wage and tax accounts
  3. 3.Distributions and shareholder loan balances reviewed
  4. 4.Unexplained items followed up with you
  5. 5.Profit and loss and balance sheet issued for the month

The year-end handoff

A clean S corporation year end means the balance sheet ties out as well as the profit and loss. Bank, card and loan balances agree with statements. Payroll totals agree with the year's W-2s and quarterly filings. Each shareholder's distributions and loans are listed. Fixed assets bought or sold are recorded with dates and invoices.

With that in place, preparing Form 1120-S and Massachusetts Form 355S is mostly a matter of mapping accounts to lines. Without it, the first weeks of tax season go to reconstruction.

If the books are behind

Many owners come to this after the election, when they realize the books were set up for a sole proprietorship. That is a normal starting point. Catch-up work is scoped and priced separately, and monthly bookkeeping starts from a clean position once it is done.

The catch-up bookkeeping readiness checklist shows what to gather before a cleanup starts.

Where we come in

We give you a scope and a price in writing before anything starts. Bring a recent bank statement, access details for your accounting software if you use one, your payroll reports and last year's return; the page on what to bring to an accounting consultation lists the rest.

General information for owner-led businesses, not advice for your specific situation. Tax and accounting rules change, and how they apply depends on facts particular to your business. Talk to us — or to another qualified professional — before acting on anything here.

Common questions

Quick answers

Can I keep taking owner draws after electing S status?
Money can still leave the business, but it has to be recorded as what it is: wages through payroll, a distribution, a loan or an accountable-plan reimbursement. Each is treated differently on the S corporation return. Recording everything as draws means the year has to be reconstructed before the return can be prepared.
Do you process payroll as part of bookkeeping?
No. Bookkeeping records the payroll reports so the books agree with the W-2 and the quarterly filings. Payroll itself is covered as payroll support, and who performs each payroll task, you, your provider or us, is agreed in writing before any work starts.
My books are behind. Can you still take this on?
Yes. The backlog is scoped and priced separately first as catch-up bookkeeping. Monthly work then starts from reconciled balances, so the S corporation return for the year is built from books that already tie out rather than from bank statements.
Why do distributions need their own account?
Distributions reduce each shareholder's stock basis, and the return reports them by shareholder. If they are mixed with wages, loans or expenses, the basis figures and the K-1s cannot be prepared without going back through the year. A separate account, by shareholder and date, keeps that work simple.
Get started

Find out where you stand.

Tell us how the business is set up and what's currently a mess. We'll tell you what we'd do first, and what it would cost.

Please don't send Social Security numbers or tax documents through this form.

Call UsGet Started